Transport and Signaling - Biology

Glycolysis (the process of breaking down glucose) takes place in the cytoplasm, or cytosol—the aqueous portion of the cytoplasm. It is in the cytoplasm where the enzymes required for glycolysis are found.

The citric acid cycle takes place in the mitochondrial matrix, and the electron transport chain takes place along the inner mitochondrial membrane in order to pump protons into the intermembrane space.

The addition and removal of phosphate groups can serve critical functions in the regulation of protein activity. The binding or uncoupling of phosphate groups frequently serves to activate or deactivate proteins.

A kinase is an enzyme that phosphorylates—or adds a phosphate group to—its ligand.

A phosphatase removes a phosphate group from its ligand.

Several different types of proteins can change the structure of a ligand, such as isomerases, and ubiquitin ligases add ubiquitin to their ligands.

The addition and removal of phosphate groups can serve critical functions in the regulation of protein activity. The binding or uncoupling of phosphate groups frequently serves to activate or deactivate proteins.

A phosphatase removes a phosphate group from its ligand.

A kinase is an enzyme that phosphorylates—or adds a phosphate group to—its ligand.

Several different types of proteins can change the structure of a ligand, such as isomerases, and ubiquitin ligases add ubiquitin to their ligands.

Ubiquitin ligases add ubiquitin to their ligands. The addition of ubiquitin acts as a signal that a protein has become ineffective and is ready for degradation. When multiple ubiquitin residues have been added to a protein molecule, it is transported to the lysosome in the cell to be digested.

A phosphatase removes a phosphate group from its ligand.

A kinase is an enzyme that phosphorylates—or adds a phosphate group to—its ligand.

The addition and removal of phosphate groups can serve critical functions in the regulation of protein activity. The binding or uncoupling of phosphate groups frequently serves to activate or deactivate proteins.

Several different types of proteins can change the structure of a ligand, such as isomerases.

A cell must exchange molecules and ions with its surroundings. This process is controlled by the selective permeability of the plasma membrane. Passive transport requires no energy from the cell; molecules like water can diffuse into and out of the cell through the phospholipid bilayer freely by way of osmosis. Other molecules and ions, like sodium, are actively transported across the phospholipid bilayer. This requires ATP created by the cell. Active transport moves solutes against their concentration gradients, which is why it requires energy.

Phagocytosis is the event of a cell engulfing particular matter from outside the cell and bringing it into the cell. Macrophages are the most prominent phagocytic cells, and help to eliminate pathogens and bacteria through phagocytosis.

Pinocytosis allows extracellular fluid to enter the cell, using invaginations on the cell membrane to create vesicles. Exocytosis involves vesicles leaving the cell, not entering. Diffusion is the passive transport of substances across the membrane and does not involve vesicles.

Exocytosis is a process by which the cell packages content and secretes it from the cell in a vesicle. Hormones, which act on cells far away from where they are produced, will travel out of the cell to reach their target tissues and organs. Vesicles of hormones will fuse with the membrane of the cell and release the hormone into the blood for transport.

DNA, RNA, and cytoplasmic constituents do not leave the cell and would not be exocytosed. Integral membrane proteins are placed in the membrane via vesicle fusion, but are not exocytosed in the process.

In biochemistry, ligands are any substance that forms a complex with a biomolecule to serve a biological purpose. The four primary types of ligands have their functional state determined by their three-dimensional chemical conformation. Tracers in the body often take the form of radioligands, but are not ligands themselves.

There are two topologically different structures inside the cell: the lumen and the cytosol. Lumen consists of the inside of the organelles and the inside of vesicles. Cytosol consists of the fluid that surrounds the organelles.

The questions states that particle A undergoes endocytosis. In endocytosis particles from outside of the cell are brought to the inside of the cell by vesicles that bud off from the cell membrane. These vesicles deliver the particles to the target organelle. The vesicles fuse with the organelle’s membrane and the particles are released into the lumen of the organelle. These particles never make contact with the cytosol side of the cell; therefore, the best answer is that particle A is destined for one of the membrane-bound organelles because it is being transported via a vesicle. This mechanism is also relevant for exocytosis. Secretory vesicles carry contents from inside the cell to the outside, without letting the contents touch the cytosol.

To answer this question you need to know the sequence of events that a protein goes through during and after synthesis.

The first step is the synthesis of protein. This occurs when mRNA is translated to protein by ribosomes. The first event is statement 2.

After its synthesis, the protein is transported to the rough endoplasmic reticulum where it is processed. This processing involves removal of unwanted amino acid sequences, such as signal sequences. The second event is statement 4.

From the rough endoplasmic reticulum the protein is transported to Golgi apparatus where it is further processed and packaged. This next event is statement 1.

The last step is the delivery of protein to the cell membrane (statement 3). Once the protein reaches the cell membrane it can either be exported to the outside (exocytosis) or become part of the membrane (integral and peripheral membrane proteins). Remember that the protein is transported by vesicles and that it never makes contact with the cytosol.

Endocytosis is the process of a cell receiving the contents of a vesicle. The vesicle will fuse with the cell membrane and release its contents into the cytoplasm for cellular use.

In contrast, exocytosis is the release of compounds from a cell via vesicle transport. Vesicles are formed at the Golgi apparatus and transported through the cytoplasm to fuse with the cell membrane, where the contents are released into the extracellular space. Transport vesicles can also be formed to contain and carry molecules away from the cell.

The plasma membrane engulfing particles to enter the cell would be an example of pinocytosis, and the conversion of light and carbon dioxide to carbohydrate and oxygen is the process of photosynthesis.

The correct answer is phagocytosis. Phagocytosis involves the engulfing of an external particle to form a phagosome (a vesicle inside the cell). This process differs from pinocytosis in that pinocyotsis refers to the engulfing of liquids from the environment. Phagocytosis is a specific form of endocytosis; thus, phagocytosis is the better answer as endocyotsis can also describe processes such as pinocytosis. Diffusion and Active Transport both do not relate to the phenomenon as no concentration gradient is in place.

Ligands bind to receptors, which cause conformational changes and various effects on the cell. Integral membrane proteins span the lipid bilayer. These proteins commonly act as receptors and bind to ligands to produce conformation changes. They cannot leave the lipid bilayer, and thus are never ligands that can bind to other receptors.

Ligands are generally small ions or molecules, such as glucose or triglycerides. Calcium ions act as second messenger ligands in signal transduction. Steroid hormones, like testosterone, bind to proteins in the nucleus to alter transcription patterns. Neurotransmitters bind to receptors on dendrites to cause action potential propagation. Inhibitors can bind to receptors to block other ligands from interacting.

Ligands and receptors are both usually proteins. Since proteins can fold into a wide variety of shapes, the receptor-ligand interaction is very specific. In some cases, certain receptors will bind two ligands that are similar in structure. For example, hemoglobin binds to both and , but binds with much higher affinity. Ligands bind receptors using only weak bonds (hydrogen bonds and Van der Waals forces). Depending on the nature of the ligand (whether it can cross the lipid bilayer or not), its receptor may be either on the cell's surface, floating in the cytoplasm, or on the nuclear membrane.

Chemotaxis refers to the movement of an organism in response to a chemical stimulus. Single or multicellular organisms may direct their movements according to certain chemicals in their environment. This is important because these organisms need to find food, flee from harmful substances, and chemotaxis also aids in development. Positive chemotaxis is movement towards a higher concentration of the chemical, whereas negative chemotaxis is movement away from the chemical.

The primary ability of secondary messengers is their ability to leave the cell membrane and travel through the phospholipid bilayer by being selectively hydrophilic or -phobic, allowing egress. This enables, for example, a cascade effect that greatly amplifies the strength of the original primary messenger signal.

Second messengers are intracellular signaling molecules. Epinephrine is a hormone that is released into the bloodstream and is thus never inside the cell. cAMP, Ca2+ and IP3 are all examples of second messengers. They respond to primary messengers—which are often hormones—by amplifying their effects and/or turning on downstream effectors.

All of the examples listed are considered second messengers except for protein kinase C, which interacts with second messenger pathways as an effector; however, it is not a second messenger itself.

Recall that second messengers are used to amplify signals within the cell. A ligand may bind to a receptor on the cell surface in order to activate a signaling cascade. Second messagers will help propagate this cascade throughout the cytosol. The messengers essentially help transfer the signal from the receptor on the cell membrane to the proteins in the cytosol that will ultimately be affected.

G-protein coupled receptors begin the signal transduction pathway by interacting with intracellular G-proteins. This interaction isn't possible until a ligand forces a conformational change in the GPCR, thereby freeing up a site for the G-protein to bind. This interaction permits the G-protein to exchange a GDP for a GTP, thereby activating the G-protein and continuing signal transduction.